Delays on trains caused by a faulty track circuit will continue all night, South West Trains has said.
There are no trains running from Waterloo to Richmond and Twickenham via Brentford.
The Reading and Windsor and Eton Riverside services from Waterloo are both being diverted via Kingston.
Services running towards London are being diverted via Kingston and will not call at St Margarets, Richmond, North Sheen, Mortlake, Barnes, Putney and Wandsworth Town.
South West Trains have confirmed passengers affected by the disruption can use their tickets on London Underground services via any reasonable routes.
Customers can also use London Buses between Clapham Junction and Twickenham and also between Barnes and Hounslow.